Publications
Spatial distribution of poultry farms using point pattern modelling: a method to address livestock environmental impacts and disease transmission risks
Authors: MC Dupas, F Pinotti, C Joshi, M Joshi, W Thanapongtharm, M Dhingra, D Blake, F Tomley, M Gilbert, Guillaume Fournié
PLoS Computational Biology • 2025
Modelling the transmission dynamics of H9N2 avian influenza viruses in a live bird market
Authors: F Pinotti, L Kohnle, J Lourenço, S Gupta, Md A Hoque, R Mahmud, P Biswas, D Pfeiffer, G Fournié
Nature Communications • 2024
EPINEST, an agent-based model to simulate epidemic dynamics in large-scale poultry production and distribution networks
Authors: F Pinotti, J Lourenço, S Gupta, SD Gupta, J Henning, D Blake, F Tomley, T Barnett, D Pfeiffer, Md A Hoque, G Fournié
PLoS Computational Biology • 2024
Shifting patterns of dengue three years after Zika virus emergence in Brazil
Authors: F Pinotti, M Giovanetti, MM de Lima, EM de Cerqueira, LCJ Alcantara, S Gupta, M Recker, J Lourenço,
Nature Communications • 2024
Genomic epidemiology sheds light on the recent spatio-temporal dynamics of Yellow Fever virus and the spatial corridor that fueled its ongoing emergence in southern Brazil
Authors: M Giovanetti, F Pinotti, C Zanluca, V Fonseca*, T Nakase, A C Koishi, M Tscha, G Soares, G Gruber Dorl, A Ernesto M L Marques, R Sousa, T Emile Ribeiro Adelino, J Xavier, C de Oliveira, S Patroca da Silva, N Rocha Guimaraes, H Fritsch, M AngĂ©lica Mares-Guia, F Levy, P Henrique Passos, V Leme da Silva, L Augusto Pereira, A Flávia Mendonça, I Luana de MacĂŞdo, D Emanuel Ribeiro de Sousa, G Rodrigues de Toledo Costa, M Botelho de Castro, F Campos de Melo Iani, M Alves Pereira, K Ribeiro Leite Jardim Cavalcante, A Ricardo Ribas de Freitas, C Frederico Campelo de Albuquerque, E Marques Macário, M Pickler Debiasi dos Anjos, R Campanher Ramos, A Alves Scarpellini Campos, A Pinter, M Chame, L Abdalla, I Nastassja Riediger, S Pontes Ribeiro, A Isabel Bento, T de Oliveira, C Freitas, N Fabiana Oliveira de Moura, A Fabri, C Damasceno Dos Santos Rodrigues, C Cardoso Dos Santos, M Antonio Barreto de Almeida, E dos Santos, J Cardoso, D Adriano Augusto, E Krempser, L Filipe Mucci, R Rispoli Gatti, S Fernandes Cardoso, J Augusto Brancher Fuck, M Goretti David Lopes, I Lucia Belmonte, G Mayoral Pedroso da Silva, M Regina Ferreira Soares, M de Melo Santos de Castilhos, J Cardoso de Souza e Silva, A Bisetto Junior, E Gemin Pouzato, L Setsuko Tanabe, D Akemi Arita, R Matsuo, J dos Santos Raymundo, P Cristina Linder Silva, A Santana AraĂşjo Ferreira Silva, S Samila, Glauco Carvalho, R Stabeli, W Navegantes, L Andrade Moreira, A Gil A Ferreira, G Garcia Pinheiro, B Tardelli Diniz Nunes, D Barbosa de Almeida Medeiros, A CecĂlia Ribeiro Cruz, R Venâncio da Cunha, W Van Voorhis, A Maria Bispo de Filippis, M Almiron, E C Holmes, D Garkauskas Ramos, A Romano, J Lourenço, L Carlos Junior Alcantara, C Nunes Duarte dos Santos
Science Advances • 2023
Atypical weather is associated with the 2022 early start of West Nile virus transmission in Italy
Authors: J Lourenço, F Pinotti, T Nakase, M Giovanetti, U Obolski
Eurosurveillance • 2022
Dynamics and Determinants of SARS-CoV-2 RT-PCR Testing on Symptomatic Individuals Attending Healthcare Centers during 2020 in Bahia, Brazil
Authors: FM Pereira, A SalomĂŁo de Araujo, A Catarina Martins Reis, A Santos da Hora, F Pinotti, RS Paton, C Vilas Boas Figueiredo, C Lopes Damasceno, D Carlos dos Santos, D Souza de Santana, D Freitas Sales, E Ariana Andrade BrandĂŁo, E da Silva Batista , FS Campos de Sousa, G Santana Menezes, J Silveira dos Santos, J Gomes Lima, J Tadeu Brito, L Dandara dos Santos, L Reboredo, M Santana Santos, M Kelly Astete Gomez, M Freitas da Cruz, M Rosa Ampuero, M Guerra Lemos da Silva, M S da PaixĂŁo Melo, M Ferreira da Silva, N de Jesus Gonçalves dos Santos, N de Souza Pessoa, R Silva de Araujo R, T de Macedo Godim, S Fraga de Oliveira Tosta, V BrandĂŁo Nardy, E Cristina Faria , B Frederico de Carvalho Dominguez Souza, J LaĂs Almeida dos Santos, P Wikramaratna, M Giovanetti, LCJ Alcântara, J Lourenço, A Leal e Silva de Mello
Viruses • 2022
Real-time seroprevalence and exposure levels of emerging pathogens in infection-naive host populations
Authors: F Pinotti, U Obolski, P Wikramaratna, M Giovanetti, R S Paton, P Klenerman, C Thompson, S Gupta, J Lourenço
Scientific reports • 2021
Anatomy of digital contact tracing: Role of age, transmission setting, adoption, and case detection
Authors: J A Moreno LĂłpez, B Arregui GarcĂa, P Bentkowski, L Bioglio, F Pinotti, P-Y BoĂ«lle, A Barrat, V Colizza, C Poletto
Science Advances • 2021
Potential impact of individual exposure histories to endemic human coronaviruses on age-dependent severity of COVID-19
Authors: F Pinotti, P S Wikramaratna, U Obolski, R S Paton, D SC Damineli, L CJ Alcantara, M Giovanetti, S Gupta, J Lourenço
BMC Medicine • 2021
Network sensitivity of systemic risk
Authors: A Ramadiah, D Di Gangi, D R Lo Sardo, V Macchiati, T Pham Minh, F Pinotti, M Wilinski, P Barucca, G Cimini
Journal of Network Theory in Finance • 2020
Tracing and analysis of 288 early SARS-CoV-2 infections outside China: A modeling study
Authors: F Pinotti, L Di Domenico, E Ortega, M Mancastroppa, G Pullano, E Valdano, P-Y Böelle, C Poletto, V Colizza
PLoS Medicine • 2020
Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
Authors: M Gilbert, G Pullano, F Pinotti, E Valdano, C Poletto, P-Y Boëlle, E D’Ortenzio, Y Yazdanpanah, SP Eholie, M Altmann, B Gutierrez, M UG Kraemer, V Colizza
The Lancet • 2020
Novel coronavirus (2019-nCoV) early-stage importation risk to Europe, January 2020
Authors: G Pullano, F Pinotti, E Valdano, P-Y Boëlle, C Poletto, V Colizza
Eurosurveillance • 2020
Interplay between competitive and cooperative interactions in a three-player pathogen system
Authors: F Pinotti, F Ghanbarnejad, P Hövel, C Poletto
Royal Society Open Science • 2020
Host contact dynamics shapes richness and dominance of pathogen strains
Authors: F Pinotti, É Fleury, D Guillemot, P-Y Boëlle, C Poletto
PLoS Computational Biology • 2019